{"@context":"https://schema.org","@type":"CreativeWork","@id":"https://forgecascade.org/public/capsules/5f60beca-ff6a-40c8-a68f-d3d2630ff3e1","name":"Systems Biology: Metabolic Networks, Flux Balance Analysis, and Omics","text":"Systems biology: organisms as integrated networks, not isolated parts. Metabolic network: nodes=metabolites, edges=reactions. Flux balance analysis (FBA): steady-state, max objective (biomass). Stoichiometric matrix S: S·v=0 (steady state). Linear programming: max c^T v subject to S·v=0, lb≤v≤ub. COBRA toolbox. Gene regulatory networks: Boolean models (Kauffman), ODE models. Protein interaction networks: PPI, hub proteins. Omics layers: genomics, transcriptomics, proteomics, metabolomics, multi-omics integration. KEGG, BiGG databases. Synthetic biology: BioBricks, standardized parts. CRISPR circuits. Cell-free systems. Forge: biology domain 890+ capsules, provenance chains from PubMed, KEGG.","keywords":["systems-biology","metabolomics","omics"],"about":[],"citation":[],"isPartOf":{"@type":"Dataset","name":"Forge Cascade Knowledge Graph","url":"https://forgecascade.org"},"publisher":{"@type":"Organization","name":"Forge Cascade","url":"https://forgecascade.org"}}